Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation (Q24814876)

4 July 2017

title

Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation (English)

1 reference

4 July 2017

main subject

support vector machine

1 reference

5

0 references

Filip Ginter

2

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Tapio Pahikkala

1

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Jouni Järvinen

object named as

Jouni Järvinen

4

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author name string

Jorma Boberg

3

1 reference

4 July 2017

language of work or name

English

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publication date

22 June 2005

1 reference

4 July 2017

1 reference

4 July 2017

volume

6

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4 July 2017

issue

1

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page(s)

157

1 reference

PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine

4 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Biomedical named entity recognition using two-phase model based on SVMs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Comparison of character-level and part of speech features for name recognition in biomedical texts.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Extracting human protein interactions from MEDLINE using a full-sentence parser

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Mining the biomedical literature in the genomic era: an overview

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Extraction of protein interaction information from unstructured text using a context-free grammar

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Extracting synonymous gene and protein terms from biological literature

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

A study of abbreviations in MEDLINE abstracts.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Tagging gene and protein names in biomedical text

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Toward information extraction: identifying protein names from biological papers.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

AZuRE, a scalable system for automated term disambiguation of gene and protein names.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Recognizing names in biomedical texts: a machine learning approach.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

GAPSCORE: finding gene and protein names one word at a time

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Automatically identifying gene/protein terms in MEDLINE abstracts.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Protein names and how to find them.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Disambiguating proteins, genes, and RNA in text: a machine learning approach.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Mining literature for protein-protein interactions.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Automated extraction of information on protein-protein interactions from the biological literature

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Combined 5 x 2 cv F test for comparing supervised classification learning algorithms.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180820

Asymptotic Behaviors of Support Vector Machines with Gaussian Kernel

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15972097

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-6-157

1 reference

journals/bmcbi/PahikkalaGBJS05

4 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

4 July 2017

1 reference