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Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression (Q24654898)

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English	Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression	scientific article

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19888207%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19888207%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

applied mathematics

0 references

information system

0 references

1

1 reference

10.1038/MSB.2009.70

Joel R. Meyerson

2

1 reference

10.1038/MSB.2009.70

4

1 reference

10.1038/MSB.2009.70

5

1 reference

10.1038/MSB.2009.70

6

subject has role

corresponding author

principal investigator

2 references

10.1038/MSB.2009.70

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19888207%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

author name string

Kayta Kobayashi

3

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19888207%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

publication date

13 October 2009

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19888207%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

language of work or name

0 references

external data available at URL

https://alterlab.org/verification_of_prediction/

Alter Lab (English)

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Molecular Systems Biology

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19888207%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

5

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19888207%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

312

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19888207%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

described by source

American Academy of Arts and Sciences

B. Rische, "Mathematical Modeling Correctly Predicts Previously Unknown Biological Mechanism of Regulation," American Association for the Advancement of Science (AAAS) EurekAlert! (October 13, 2009) (English)

publication date

13 October 2009

1 reference

https://eurekalert.org/news-releases/815594

Faculty Opinions

M. Méchali, Faculty Opinions recommendation 1728974 (February 2010). (English)

Marcel Méchali

publication date

February 2010

1 reference

https://facultyopinions.com/article/1728974#tab=abstract

A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

7 April 2017

Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

7 April 2017

OriDB: a DNA replication origin database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

7 April 2017

The requirement of yeast replication origins for pre-replication complex proteins is modulated by transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

7 April 2017

Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

7 April 2017

DNA synthesis at individual replication forks requires the essential initiation factor Cdc45p

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

7 April 2017

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

7 April 2017

Genetic and physical maps of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

7 April 2017

Systematic determination of genetic network architecture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

7 April 2017

Serial regulation of transcriptional regulators in the yeast cell cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

7 April 2017

Singular value decomposition for genome-wide expression data processing and modeling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

7 April 2017

Global control of cell-cycle transcription by coupled CDK and network oscillators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

Collective behavior in gene regulation: the cell is an oscillator, the cell cycle a developmental process

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

Genetic reconstruction of a functional transcriptional regulatory network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

Discovery of principles of nature from mathematical modeling of DNA microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

A rapid genome-scale response of the transcriptional oscillator to perturbation reveals a period-doubling path to phenotypic change

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

Genome-wide hierarchy of replication origin usage in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

Natural isolates of Saccharomyces cerevisiae display complex genetic variation in sporulation efficiency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

Terminating the transcript: breaking up is hard to do.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

Eukaryotic mRNA 3' processing: a common means to different ends

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

E Pluribus Unum: 3' end formation of polyadenylated mRNAs, histone mRNAs, and U snRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

New perspectives on connecting messenger RNA 3' end formation to transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

Global response of Saccharomyces cerevisiae to an alkylating agent

1 reference

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28 September 2017

Cdc6 is an unstable protein whose de novo synthesis in G1 is important for the onset of S phase and for preventing a 'reductional' anaphase in the budding yeast Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

Relationship of replication and transcription of Simian Virus 40 DNA.

1 reference

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28 September 2017

Role of transcriptional and posttranscriptional regulation in expression of histone genes in Saccharomyces cerevisiae

1 reference

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Transcription interferes with elements important for chromosome maintenance in Saccharomyces cerevisiae

1 reference

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1 reference

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Transcriptional elements as components of eukaryotic origins of DNA replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779084

28 September 2017

Adenovirus DNA replication facilitates binding of the MLTF/USF transcription factor to the viral major late promoter within infected cells

1 reference

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1 reference

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1 reference

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Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex

1 reference

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30 May 2018

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1 reference

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30 May 2018

Enhancement of bacteriophage T4 late transcription by components of the T4 DNA replication apparatus

1 reference

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Molecular characterisation of soft tissue tumours: a gene expression study

1 reference

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Replication fork progression is impaired by transcription in hyperrecombinant yeast cells lacking a functional THO complex

1 reference

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Structural features in a brittle–ductile wax model of continental extension

1 reference

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DNA replication and the early to late transition in adenovirus infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/19888207

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription-induced deletions in Escherichia coli plasmids

1 reference

https://pubmed.ncbi.nlm.nih.gov/19888207

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1038/MSB.2009.70

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19888207%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

release_fvriio4lhvbdhbyrmwfd557r4e

1 reference

https://api.fatcat.wiki/v0/release/fvriio4lhvbdhbyrmwfd557r4e

24 November 2022

based on heuristic

mapped directly with Wikidata item

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19888207%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

PubMed publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19888207%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

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