Remediation of the protein data bank archive (Q24650571)

6

0 references

Wolfgang Bluhm

3

Wolfgang F Bluhm

0 references

John Westbrook

21

John Westbrook

0 references

Jeramia Ory

Jeramia Ory

18

0 references

Jawahar Swaminathan

Jawahar Swaminathan

16

0 references

Catherine L. Lawson

Catherine L Lawson

11

0 references

Sameer Velankar

Sameer Velankar

17

0 references

Wim F. Vranken

Wim Vranken

20

0 references

Jasmine Young

Jasmine Young

24

0 references

Dimitris Dimitropoulos

4

Dimitris Dimitropoulos

0 references

Zukang Feng

2

Zukang Feng

0 references

Huanwang Yang

23

Huanwang Yang

0 references

John Markley

12

John L Markley

0 references

Haruki Nakamura

13

Haruki Nakamura

0 references

Kim Henrick

1

Kim Henrick

0 references

Eldon L Ulrich

19

Eldon L Ulrich

0 references

Eugene Krissinel

10

Eugene Krissinel

0 references

Reiko Yamashita

22

Judith L Flippen-Anderson

Reiko Yamashita

0 references

7

Judith L Flippen-Anderson

0 references

author name string

Jurgen F Doreleijers

5

0 references

John Ionides

8

0 references

Chisa Kamada

9

0 references

Richard Newman

14

0 references

Yukiko Shimizu

15

0 references

Muhammed Yousufuddin

VIPERdb: a relational database for structural virology

25

0 references

publication date

January 2008

0 references

language of work or name

English

0 references

published in

Nucleic Acids Research

0 references

volume

36

0 references

issue

Database issue

0 references

page(s)

D426-33

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

E-MSD: an integrated data resource for bioinformatics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

pdb-care (PDB carbohydrate residue check): a program to support annotation of complex carbohydrate structures in PDB files

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

7 April 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

The Blue Obelisk-interoperability in chemical informatics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

The Protein Data Bank: a computer-based archival file for macromolecular structures

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

Announcing the worldwide Protein Data Bank

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

RASMOL: biomolecular graphics for all

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

The Universal Protein Resource (UniProt).

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

The backrub motion: how protein backbone shrugs when a sidechain dances

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

The Uppsala Electron-Density Server

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

PDBML: the representation of archival macromolecular structure data in XML.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

Validation of protein structures for protein data bank

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

E-MSD: an integrated data resource for bioinformatics.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

The PDB format, mmCIF, and other data formats

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

CHIMERA: a software tool for reaction rate calculations and kinetics and thermodynamics analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

The PDB data uniformity project

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

Recent changes to RasMol, recombining the variants

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

WebMol--a Java-based PDB viewer.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

eF-site and PDBjViewer: database and viewer for protein functional sites

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

PQS: a protein quaternary structure file server

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238854

AutoDep: a web-based system for deposition and validation of macromolecular structural information

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18073189

12 December 2020

inferred from PubMed ID database lookup

Deposition of Macromolecular Structures

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18073189

12 December 2020

inferred from PubMed ID database lookup

AMBER: Assisted model building with energy refinement. A general program for modeling molecules and their interactions

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM937

7 January 2021

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM937

7 January 2021

Automatic generation of 3D-atomic coordinates for organic molecules

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM937

7 January 2021

PatMatch: a program for finding patterns in peptide and nucleotide sequences

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM937

7 January 2021

Computation and management of chemical properties in CACTVS: An extensible networked approach toward modularity and compatibility

1 reference

7 December 2024

https://opencitations.net/index/api/v1/citations/10.1021/CI00017A013

SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules

1 reference

7 December 2024

https://opencitations.net/index/api/v1/citations/10.1021/CI00057A005

Identifiers

DOI

10.1093/NAR/GKM937

0 references

DBLP publication ID

journals/nar/HenrickFBDDDFIKKLMNNSSVOUVWYYYYB08

1 reference

DBLP Dataset 2021-01-02