Dynamic circadian protein-protein interaction networks predict temporal organization of cellular functions (Q24337833)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

title

Dynamic circadian protein-protein interaction networks predict temporal organization of cellular functions (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

protein function prediction

27 February 2020

main subject

0 references

circadian rhythm

0 references

Casein kinase 2 beta

1 reference

Non-POU domain containing octamer binding

1 reference

identical protein binding

1 reference

Casein kinase 1, epsilon

1 reference

Period circadian clock 2

1 reference

Cryptochrome 1 (photolyase-like)

1 reference

Cryptochrome 2 (photolyase-like)

1 reference

Aryl hydrocarbon receptor nuclear translocator-like

1 reference

Period circadian clock 1

1 reference

Circadian locomotor output cycles kaput

1 reference

Protein phosphatase 1 catalytic subunit alpha

1 reference

protein-protein interaction

1 reference

based on heuristic

inferred from title

author

Ravi Kiran Reddy Kalathur

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Erich Wanker

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Matthias Futschik

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

5

Pablo Porras

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

author name string

Thomas Wallach

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Katja Schellenberg

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Bert Maier

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Achim Kramer

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

language of work or name

English

0 references

publication date

28 March 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

page(s)

e1003398

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

27 February 2020

copyright license

start time

28 March 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Histone lysine demethylase JARID1a activates CLOCK-BMAL1 and influences the circadian clock

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

The period of the circadian oscillator is primarily determined by the balance between casein kinase 1 and protein phosphatase 1

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Protein phosphatase 1 (PP1) is a post-translational regulator of the mammalian circadian clock

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

A molecular mechanism for circadian clock negative feedback

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

A genome-wide RNAi screen for modifiers of the circadian clock in human cells

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

SIRT1 regulates circadian clock gene expression through PER2 deacetylation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

A human protein-protein interaction network: a resource for annotating the proteome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Dec1 and Dec2 are regulators of the mammalian molecular clock

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Network biology: understanding the cell's functional organization

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Coordination of circadian timing in mammals

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Posttranslational mechanisms regulate the mammalian circadian clock

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Role of the CLOCK protein in the mammalian circadian mechanism

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Global quantification of mammalian gene expression control

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

PERIOD1-associated proteins modulate the negative limb of the mammalian circadian oscillator

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Coordinated transcription of key pathways in the mouse by the circadian clock

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Exploring complex networks

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

The histone methyltransferase MLL1 permits the oscillation of circadian gene expression

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

CIPC is a mammalian circadian clock protein without invertebrate homologues

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

BMAL1-dependent circadian oscillation of nuclear CLOCK: posttranslational events induced by dimerization of transcriptional activators of the mammalian clock system

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Evidence for dynamically organized modularity in the yeast protein-protein interaction network

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Extensive and divergent circadian gene expression in liver and heart

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Dynamic Complex Formation During the Yeast Cell Cycle

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Cell-autonomous circadian clock of hepatocytes drives rhythms in transcription and polyamine synthesis

10 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Kinases and phosphatases in the mammalian circadian clock

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Defining the transcriptome and proteome in three functionally different human cell lines

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Clocks not winding down: unravelling circadian networks

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Regulation of BMAL1 protein stability and circadian function by GSK3beta-mediated phosphorylation.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Roles of CLOCK phosphorylation in suppression of E-box-dependent transcription

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Harmonics of circadian gene transcription in mammals

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

A large-scale functional RNAi screen reveals a role for CK2 in the mammalian circadian clock.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

An experimentally derived confidence score for binary protein-protein interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Identification of SCF ubiquitin ligase substrates by global protein stability profiling

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Global protein stability profiling in mammalian cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Post-translational modifications regulate the ticking of the circadian clock.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

UniHI: an entry gate to the human protein interactome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

The value of high quality protein-protein interaction networks for systems biology

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Building functional modules from molecular interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Circadian orchestration of the hepatic proteome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610820

Identification of RACK1 and protein kinase Calpha as integral components of the mammalian circadian clock.

27 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003398

Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003398

UniHI 4: new tools for query, analysis and visualization of the human protein-protein interactome

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003398

Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23555304

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1003398

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23555304%20AND%20SRC:MED&resulttype=core&format=json