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Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA (Q21560833)

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Tensor Decomposition Reveals Concurrent Evolutionary Convergences and Divergences and Correlations with Structural Motifs in Ribosomal RNA

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English	Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA	scientific article	Tensor Decomposition Reveals Concurrent Evolutionary Convergences and Divergences and Correlations with Structural Motifs in Ribosomal RNA

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625625%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625625%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

tensor decomposition

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inferred from title

Robin R. Gutell

3

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Robin R Gutell

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Robin R

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Gutell

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Europe PubMed Central

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2 February 2020

4

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corresponding author

principal investigator

object named as

Orly Alter

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Orly

author last names

Alter

3 references

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625625%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

10.1371/JOURNAL.PONE.0018768

PMC publication ID

1 September 2022

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Chaitanya Muralidhara

1

author given names

Chaitanya

author last names

Muralidhara

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625625%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Andrew M Gross

2

author given names

Andrew M

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Gross

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Europe PubMed Central

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2 February 2020

publication date

29 April 2011

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Europe PubMed Central

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2 February 2020

language of work or name

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external data available at URL

https://alterlab.org/rRNA/

Alter Lab (English)

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1 reference

Europe PubMed Central

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2 February 2020

6

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2 February 2020

4

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2 February 2020

e18768

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625625%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Database resources of the National Center for Biotechnology Information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

19 March 2017

Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression

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19 March 2017

A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies

1 reference

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19 March 2017

Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

19 March 2017

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

19 March 2017

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

19 March 2017

RNA sequence analysis using covariance models

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

19 March 2017

Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

19 March 2017

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

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19 March 2017

Single-Stranded Adenine-Rich DNA and RNA Retain Structural Characteristics of Their Respective Double-Stranded Conformations and Show Directional Differences in Stacking Pattern †

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19 March 2017

Structural basis for contrasting activities of ribosome binding thiazole antibiotics

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19 March 2017

Recognition of cognate transfer RNA by the 30S ribosomal subunit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

19 March 2017

Structure of the 30S ribosomal subunit

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19 March 2017

Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

19 March 2017

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

19 March 2017

Evolution of polyketide synthases in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

19 March 2017

Systematic determination of genetic network architecture

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19 March 2017

The origin of the genetic code

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7 April 2017

A kingdom-level phylogeny of eukaryotes based on combined protein data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

7 April 2017

Singular value decomposition for genome-wide expression data processing and modeling

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

7 April 2017

Evolution of the genetic apparatus

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

7 April 2017

Discovery of principles of nature from mathematical modeling of DNA microarray data

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12 September 2017

The accuracy of ribosomal RNA comparative structure models

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12 September 2017

A definition of the domains Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics

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12 September 2017

A universal mode of helix packing in RNA.

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12 September 2017

Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins

1 reference

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12 September 2017

The use of sequence comparison to detect 'identities' in tRNA genes

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12 September 2017

RNA tertiary structure mediation by adenosine platforms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

12 September 2017

Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes

1 reference

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30 May 2018

Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods

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30 May 2018

Preadaptation and Multiple Evolutionary Pathways

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21 January 2018

The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0018768

21 January 2018

Involvement of 16S rRNA nucleotides G1338 and A1339 in discrimination of initiator tRNA.

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0018768

21 January 2018

A story: unpaired adenosine bases in ribosomal RNAs

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12 December 2020

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10.1371/JOURNAL.PONE.0018768

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2 February 2020

2011PLoSO...618768M

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2 February 2020

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2 February 2020

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