Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA (Q21560833)

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Tensor Decomposition Reveals Concurrent Evolutionary Convergences and Divergences and Correlations with Structural Motifs in Ribosomal RNA

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English	Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA	scientific article	Tensor Decomposition Reveals Concurrent Evolutionary Convergences and Divergences and Correlations with Structural Motifs in Ribosomal RNA

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625625%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625625%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

tensor decomposition

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based on heuristic

inferred from title

3

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Robin R Gutell

author given names

Robin R

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Gutell

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2 February 2020

4

subject has role

corresponding author

principal investigator

object named as

Orly Alter

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Orly

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Alter

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625625%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

10.1371/JOURNAL.PONE.0018768

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1 September 2022

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Chaitanya Muralidhara

1

author given names

Chaitanya

author last names

Muralidhara

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625625%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Andrew M Gross

2

author given names

Andrew M

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Gross

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2 February 2020

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29 April 2011

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2 February 2020

external data available at URL

https://alterlab.org/rRNA/

Alter Lab (English)

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2 February 2020

6

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2 February 2020

4

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2 February 2020

e18768

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2 February 2020

Database resources of the National Center for Biotechnology Information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094155

19 March 2017

Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression

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A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies

1 reference

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Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription

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19 March 2017

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

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19 March 2017

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

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RNA sequence analysis using covariance models

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Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

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Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

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Single-Stranded Adenine-Rich DNA and RNA Retain Structural Characteristics of Their Respective Double-Stranded Conformations and Show Directional Differences in Stacking Pattern †

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Structural basis for contrasting activities of ribosome binding thiazole antibiotics

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Recognition of cognate transfer RNA by the 30S ribosomal subunit

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Structure of the 30S ribosomal subunit

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Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution

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19 March 2017

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

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19 March 2017

Evolution of polyketide synthases in bacteria

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19 March 2017

Systematic determination of genetic network architecture

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The origin of the genetic code

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A kingdom-level phylogeny of eukaryotes based on combined protein data

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Singular value decomposition for genome-wide expression data processing and modeling

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7 April 2017

Evolution of the genetic apparatus

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7 April 2017

Discovery of principles of nature from mathematical modeling of DNA microarray data

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12 September 2017

The accuracy of ribosomal RNA comparative structure models

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A definition of the domains Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics

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12 September 2017

A universal mode of helix packing in RNA.

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RNA tertiary structure mediation by adenosine platforms

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Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes

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Preadaptation and Multiple Evolutionary Pathways

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The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction

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21 January 2018

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A story: unpaired adenosine bases in ribosomal RNAs

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12 December 2020

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10.1371/JOURNAL.PONE.0018768

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2 February 2020

2011PLoSO...618768M

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2 February 2020

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